Parental gene:

RPS3A, ENSTBEG00000002963

Aliases:None
Description:ribosomal protein S3A [Source:HGNC Symbol;Acc:10421]
Organism:Treeshrew (Tupaia belangeri)
Coordinates:GeneScaffold_1280:45268..62714(+)


>ENSTBEG00000002963
ATGGCGGTTGGCAAGAATAAGCGCCTTACGAAAGGCGGCAAAAAGGGAGCCAAGAAGAAAGTNNNTGATCCATTTTCTAA
AAAAGATTGGTATGACGTGAAAGCACCTGCCATGTTCAACATAAGAAATATTGGGAAGACACTGGTTACCAGGACTCAAG
GAACCAAAATCGCGTCCGATGGCCTTAAGGGCCGTGTGTTTGAAGTGAGCCTTGCAGATCTGCAGAATGACGAAGTCGCA
TTTAGGAAATTCAAGCTAATTACTGAGGACGTTCAGGGCAAAAACTGCCTGACTAACTTCCATGGCATGGATCTCACCCG
TGACAAAATGTGTTCCATGGTTAAAAAATGGCAGACCATGATTGAAGCTCATGTCGATGTCAAGACTACCGATGGTTATT
TGCTTCGTCTCTTCTGTGTTGGGTTTACTAAAAAACGCAACAACCAGATACGGAAGACCTCTTATGCCCAGCATCAGCAG
GTCCGCCAAATCCGGAAGAAGATGATGGAAATCATGACCCGGGAGGTGCAGACAAATGACTTGAAAGAAGTGGTCAATAA
ACTGATTCCAGACAGCATCGGAAAAGACATAGAAAAGGCCTGCCAGTCCATCTACCCTCTCCACGATGTCTTCGTCAGGA
AAGTCAAAATGCTGAAGAAGCCCAAGTTTGAATTGGGAAAACTCATGGAGCTTCATGGTGAAGGTAGTAGCTCTGGAAAA
GCTACTGGGGATGAGACGGGTGCCAAAGTTGAACGAGCTGATGGATATGAACCACCAGTCCAAGAATCTGTTTAA

Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002268 possible_ortholog 7 retrogenes
retro_cjac_2, retro_cjac_21, retro_cjac_249, retro_cjac_312, retro_cjac_337, retro_cjac_368, retro_cjac_78,
Dipodomys ordii ENSDORG00000002250 possible_ortholog 10 retrogenes
retro_dord_142, retro_dord_168, retro_dord_193, retro_dord_209, retro_dord_229, retro_dord_314, retro_dord_380, retro_dord_752, retro_dord_757, retro_dord_95,
Erinaceus europaeus ENSEEUG00000004994 possible_ortholog 4 retrogenes
retro_eeur_297, retro_eeur_510, retro_eeur_517, retro_eeur_66,
Homo sapiens ENSG00000145425 ortholog_one2one 40 retrogenes
retro_hsap_1080, retro_hsap_1178, retro_hsap_1320, retro_hsap_144, retro_hsap_1507, retro_hsap_1559, retro_hsap_1620, retro_hsap_1891, retro_hsap_1994, retro_hsap_2575, retro_hsap_2578, retro_hsap_2607, retro_hsap_2700, retro_hsap_274, retro_hsap_2803, retro_hsap_2908, retro_hsap_2909, retro_hsap_3020, retro_hsap_3112, retro_hsap_313, retro_hsap_3213, retro_hsap_3366, retro_hsap_3675, retro_hsap_3876, retro_hsap_3878, retro_hsap_3879, retro_hsap_3910, retro_hsap_3929, retro_hsap_3931, retro_hsap_4017, retro_hsap_4020, retro_hsap_4021, retro_hsap_588, retro_hsap_602, retro_hsap_613, retro_hsap_683, retro_hsap_789, retro_hsap_838, retro_hsap_888, retro_hsap_914,
Gorilla gorilla ENSGGOG00000003182 possible_ortholog 2 retrogenes
retro_ggor_70, retro_ggor_97,
Myotis lucifugus ENSMLUG00000014788 ortholog_one2one 8 retrogenes
retro_mluc_1197, retro_mluc_1397, retro_mluc_1568, retro_mluc_1846, retro_mluc_2130, retro_mluc_2158, retro_mluc_2388, retro_mluc_862,
Macaca mulatta ENSMMUG00000021821 possible_ortholog 1 retrogene
retro_mmul_2297,
Monodelphis domestica ENSMODG00000000969 ortholog_one2many 6 retrogenes
retro_mdom_1040, retro_mdom_1229, retro_mdom_1396, retro_mdom_1480, retro_mdom_627, retro_mdom_694,
Mus musculus ENSMUSG00000028081 possible_ortholog 2 retrogenes
retro_mmus_218, retro_mmus_254,
Nomascus leucogenys ENSNLEG00000005815 ortholog_one2one 26 retrogenes
retro_nleu_1160, retro_nleu_1177, retro_nleu_1402, retro_nleu_1472, retro_nleu_1483, retro_nleu_1487, retro_nleu_1816, retro_nleu_1878, retro_nleu_1992, retro_nleu_209, retro_nleu_2437, retro_nleu_2567, retro_nleu_2571, retro_nleu_2753, retro_nleu_281, retro_nleu_2979, retro_nleu_3087, retro_nleu_443, retro_nleu_526, retro_nleu_654, retro_nleu_658, retro_nleu_758, retro_nleu_767, retro_nleu_799, retro_nleu_942, retro_nleu_962,
Oryctolagus cuniculus ENSOCUG00000007011 ortholog_one2many 1 retrogene
retro_ocun_257,
Rattus norvegicus ENSRNOG00000011893 possible_ortholog 1 retrogene
retro_rnor_198,
Sarcophilus harrisii ENSSHAG00000015088 ortholog_many2many 2 retrogenes
retro_shar_777, retro_shar_95,
Sus scrofa ENSSSCG00000009019 ortholog_one2one 3 retrogenes
retro_sscr_27, retro_sscr_749, retro_sscr_762,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_tbel_11 90.56 88.26
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2. retro_tbel_39 94.70 100.00
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3. retro_tbel_90 81.62 68.94
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4. retro_tbel_92 86.47 63.64
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5. retro_tbel_116 78.70 61.74
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6. retro_tbel_133 89.44 67.42
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7. retro_tbel_137 88.15 50.76
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8. retro_tbel_172 86.47 63.64
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9. retro_tbel_206 80.15 100.00
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10. retro_tbel_281 71.13 89.39
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11. retro_tbel_317 93.47 75.38
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12. retro_tbel_336 90.60 100.00
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13. retro_tbel_373 93.07 76.14
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14. retro_tbel_375 88.99 82.20
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15. retro_tbel_386 71.43 94.70
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16. retro_tbel_399 79.07 63.64
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17. retro_tbel_423 75.23 82.20
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18. retro_tbel_438 84.71 59.09
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19. retro_tbel_445 88.35 100.00
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20. retro_tbel_598 90.28 81.44
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21. retro_tbel_619 85.10 78.03
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22. retro_tbel_623 80.45 100.00
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23. retro_tbel_671 80.75 100.00
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24. retro_tbel_859 72.97 81.82
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25. retro_tbel_912 85.12 63.64
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26. retro_tbel_928 91.50 57.95
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27. retro_tbel_956 63.09 56.06
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28. retro_tbel_973 90.23 100.00
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29. retro_tbel_1005 86.49 55.68
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30. retro_tbel_1119 81.93 62.88
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31. retro_tbel_1232 85.87 69.32
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32. retro_tbel_1318 63.47 81.06
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33. retro_tbel_1375 82.88 54.17
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34. retro_tbel_1378 77.78 87.12
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35. retro_tbel_1383 81.67 68.18
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36. retro_tbel_1417 83.93 63.64
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37. retro_tbel_1421 81.77 75.38
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38. retro_tbel_1509 62.50 50.76
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39. retro_tbel_1686 88.30 100.00
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40. retro_tbel_1698 86.59 66.67
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41. retro_tbel_1720 74.36 100.00
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42. retro_tbel_1721 72.93 65.91
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43. retro_tbel_1744 84.96 100.00
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44. retro_tbel_1814 77.22 88.26
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45. retro_tbel_1829 84.53 68.56
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46. retro_tbel_1856 78.92 62.12
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47. retro_tbel_1896 89.88 63.64
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48. retro_tbel_1948 87.69 73.48
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49. retro_tbel_1960 71.37 89.39
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50. retro_tbel_1999 78.85 58.71
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51. retro_tbel_2200 72.99 51.52
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52. retro_tbel_2306 68.64 63.64
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53. retro_tbel_2463 92.86 63.64
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54. retro_tbel_2483 88.21 73.48
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55. retro_tbel_2510 78.03 83.33
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56. retro_tbel_2626 77.44 100.00
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57. retro_tbel_2654 83.63 63.64
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58. retro_tbel_2657 71.69 62.50
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59. retro_tbel_2745 73.79 77.27
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60. retro_tbel_2759 89.85 100.00
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61. retro_tbel_2760 91.71 76.89
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62. retro_tbel_2764 90.49 99.24
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63. retro_tbel_2857 85.26 94.32
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64. retro_tbel_2957 87.03 89.39
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65. retro_tbel_2959 79.78 100.00
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66. retro_tbel_3114 81.70 56.82
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67. retro_tbel_3212 83.73 78.79
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68. retro_tbel_3255 88.89 57.95
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69. retro_tbel_3259 84.27 100.00
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70. retro_tbel_3299 83.80 81.06
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71. retro_tbel_3372 87.60 97.73
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72. retro_tbel_3416 94.05 63.64
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73. retro_tbel_3471 87.50 63.64
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74. retro_tbel_3486 85.45 100.00
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75. retro_tbel_3513 96.60 100.00
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76. retro_tbel_3558 85.71 100.00
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77. retro_tbel_3613 97.73 100.00
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78. retro_tbel_3631 76.51 56.06
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79. retro_tbel_3655 86.26 68.18
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80. retro_tbel_3705 77.21 51.52
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81. retro_tbel_3755 84.28 60.23
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82. retro_tbel_3786 74.67 55.68
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83. retro_tbel_3815 88.02 63.26
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84. retro_tbel_3823 95.45 100.00
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85. retro_tbel_3832 91.35 100.00
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86. retro_tbel_3882 80.45 100.00
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87. retro_tbel_3947 89.47 100.00
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88. retro_tbel_3966 88.52 78.79
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89. retro_tbel_4116 99.61 96.59
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90. retro_tbel_4144 90.56 66.29
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91. retro_tbel_4147 82.71 100.00
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92. retro_tbel_4211 83.20 95.83
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93. retro_tbel_4220 78.54 81.44
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94. retro_tbel_4294 76.19 54.92
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95. retro_tbel_4304 80.61 61.74
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96. retro_tbel_4347 73.66 76.89
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97. retro_tbel_4428 81.66 63.64
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98. retro_tbel_4579 87.82 74.24
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Download FASTA sequences of all ENSTBEG00000002963 retrocopies