RetrogeneDB ID: | retro_tbel_2957 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_125309:40842..41549(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 87.03 % |
Parental protein coverage: | 89.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLT |
DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSL.DLQ..E.AFRK.KLITEDVQ.KNCLT | |
Retrocopy | DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLVDLQDEEAAFRK*KLITEDVQDKNCLT |
Parental | NFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKM |
NFHG..LT.DKMCSMVKKWQTM.EAHV.VK.T.GYLLRLFCVGFTKK.NNQI.KTSYAQHQQV.QI.KKM | |
Retrocopy | NFHGVELTHDKMCSMVKKWQTMTEAHVHVKNTNGYLLRLFCVGFTKKCNNQIQKTSYAQHQQVLQIQKKM |
Parental | MEIMTREVQTNDLKEVVNKLIPDSI-GKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKL-MELHGEGS |
.EIMT.EVQTND.KE.VNKLIPDSI.GK.IEKACQSI.PLHD.FVRKVKMLKKP.F.LGKL.MELHGEGS | |
Retrocopy | TEIMTQEVQTNDCKEEVNKLIPDSI>GKNIEKACQSICPLHDIFVRKVKMLKKPRFDLGKL<MELHGEGS |
Parental | SSGK-ATGDETGAKVERADGYEPPVQESV |
SSG..ATGDETGAKVERAD.YEPPVQESV | |
Retrocopy | SSGQ<ATGDETGAKVERADDYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |