RetrogeneDB ID: | retro_tbel_2760 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_118550:2472..3072(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 91.71 % |
Parental protein coverage: | 76.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LKGRVFEVSLADLQNDEVAFRKFKLITEDVQG-KNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTT |
LKGRVFEVSLADLQNDEVAF.KFKLITED.QG.KNCLTNFHGMDLTRDKMCSM..KWQTM.EAHVDVKTT | |
Retrocopy | LKGRVFEVSLADLQNDEVAFKKFKLITEDIQG>KNCLTNFHGMDLTRDKMCSMAEKWQTMTEAHVDVKTT |
Parental | DGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIG-KDIEK |
DGYLLRLFC.GFTKK.NNQ.RKTSYAQHQQVRQI.KKMM.IMTREVQTNDLKEVVNKLIP.SIG.KDIEK | |
Retrocopy | DGYLLRLFCAGFTKKHNNQMRKTSYAQHQQVRQIQKKMMGIMTREVQTNDLKEVVNKLIPVSIG<KDIEK |
Parental | ACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
ACQSIYPLHDVFVRKVKMLKKP.FELGKL...HGEGSSSGKATGDETGAKVERADGYEPPVQESV | |
Retrocopy | ACQSIYPLHDVFVRKVKMLKKPRFELGKL---HGEGSSSGKATGDETGAKVERADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |