RetrogeneDB ID: | retro_tbel_4147 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_68847:1264..2053(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 82.71 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAVGKNKRLTKGGKK-GAKKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEV |
M.V.K.K.L.K.GKK.G......DP.SKKDW.D.K..AMF.IRNIGKTLVTR.QGTKIA.D.LKG.VFEV | |
Retrocopy | MVVNKDKSLAKDGKK<GSQEE-SDPCSKKDW*DMKESAMFHIRNIGKTLVTRIQGTKIAPDSLKGHVFEV |
Parental | SLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKW-QTMIEAHVDVKTTDGYLLRLF |
SLADLQNDEV.FRKF.LITEDVQGKNCLTNFHGMDLT.DKMCS.VKK..QTMIEAHVDVKTT.GYLL.LF | |
Retrocopy | SLADLQNDEVSFRKFELITEDVQGKNCLTNFHGMDLTHDKMCSTVKKM>QTMIEAHVDVKTTYGYLLHLF |
Parental | CVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLH |
CVGFTKK.N.QI.KTSYAQ..QVRQIRKKMMEIMT.EVQT.DLKEVVNKLIPDSIGKDIE.AC.SIYP.H | |
Retrocopy | CVGFTKKGNDQIQKTSYAQYPQVRQIRKKMMEIMTQEVQTTDLKEVVNKLIPDSIGKDIEEAC*SIYPIH |
Parental | DVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
DVFVRKVKM..K.KFELGKLMELHGEGSSSGKATGDE.G.KVERADGYEPPVQESV | |
Retrocopy | DVFVRKVKMMMKYKFELGKLMELHGEGSSSGKATGDEKGTKVERADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |