RetrogeneDB ID: | retro_tbel_598 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_2527:767728..768372(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 90.28 % |
Parental protein coverage: | 81.44 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQT |
TRTQGTKI.S.GLKG.VFEVSLADLQND.V.FRKFKLITEDVQGKNCLTNFHGMDLTRDKMCS.VKKWQT | |
Retrocopy | TRTQGTKITSVGLKGCVFEVSLADLQNDKVTFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSRVKKWQT |
Parental | MIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLI |
MI.AHVD.KTTDGYLL.LFC.GFTKK.NNQIRKTSYA.H.QVRQIRKKMMEIMTREVQTN.LKEVVNKLI | |
Retrocopy | MIVAHVDDKTTDGYLLHLFCAGFTKKCNNQIRKTSYALH*QVRQIRKKMMEIMTREVQTNGLKEVVNKLI |
Parental | PDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEG-SSSGKATGDETGAKVERADGYEP |
PDS.GKDIEKACQSIY.LHD.FV.KVKMLKKPKFELGKLMELHGEG..SSGKATGDETGAKVE.ADGYEP | |
Retrocopy | PDSTGKDIEKACQSIYLLHDIFVKKVKMLKKPKFELGKLMELHGEG<CSSGKATGDETGAKVE*ADGYEP |
Parental | PVQESV |
PVQESV | |
Retrocopy | PVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |