RetrogeneDB ID: | retro_tbel_2306 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_108781:7962..8462(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 68.64 % |
Parental protein coverage: | 63.64 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | LTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLR-LFCVGFTKKRNNQIRKTSYAQHQQVRQIR |
L.NFH.M.LT.DKMCSMVK..QTMI..HVD.KTT..Y.L..LF.VGF....NNQI.K.S.AQH..V.QI. | |
Retrocopy | LPNFHAMALTHDKMCSMVKE*QTMIKTHVDIKTTNCYFLF<LFYVGFV*NHNNQIWKSS*AQHEHVHQIW |
Parental | KKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEG |
..M..IM..EVQTN..KEVVNKLIP.SIGKDIEKACQSI.PLHDVF..KVKMLKK.KFE.G.LME..GEG | |
Retrocopy | R-MTQIMNQEVQTNAFKEVVNKLIPHSIGKDIEKACQSISPLHDVFIKKVKMLKKHKFEWGNLMEFYGEG |
Parental | SSSGKATGDETGAKVERADGYEPPVQESV |
.SSGK....ETGAKVE.ADG..PP.QE.V | |
Retrocopy | GSSGKTSEGETGAKVEQADGCDPPIQEYV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |