RetrogeneDB ID: | retro_sscr_749 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 4:16388082..16388530(+) | ||
Located in intron of: | ENSSSCG00000024424 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSSSCG00000009019 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 83.33 % |
Parental protein coverage: | 56.44 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLI |
KKKVVDPFSKKDWYDVKAPAMFNIR..GKTLVTRTQGTKI.SDGLKG.VFEVSLADLQNDE.AFRKFKLI | |
Retrocopy | KKKVVDPFSKKDWYDVKAPAMFNIRHTGKTLVTRTQGTKITSDGLKGHVFEVSLADLQNDEAAFRKFKLI |
Parental | TEDVQGKNCLTNFHGMD-LTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYA |
T.D..GKNCLTNF.GMD.LT.DK.CSM.KKWQTM.EAHVDVKTTDGYLL.LFC.G.TKK.NNQI.K.S.A | |
Retrocopy | TKDILGKNCLTNFQGMD>LTCDKTCSMFKKWQTMTEAHVDVKTTDGYLLHLFCAGVTKKHNNQIQKPSCA |
Parental | QHQQVRQIRK |
QHQQV..I.. | |
Retrocopy | QHQQVCEIQR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 281 .66 RPM |
SRP014902_testis | 0 .00 RPM | 599 .31 RPM |
SRP018288_heart | 0 .00 RPM | 789 .40 RPM |
SRP018288_kidney | 0 .00 RPM | 593 .30 RPM |
SRP018288_liver | 0 .00 RPM | 512 .99 RPM |
SRP018288_lung | 0 .00 RPM | 537 .03 RPM |
SRP018856_adipose | 0 .00 RPM | 1162 .09 RPM |
SRP035408_brain | 0 .00 RPM | 575 .50 RPM |
SRP035408_liver | 0 .00 RPM | 488 .04 RPM |