RetrogeneDB ID: | retro_tbel_2626 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_114466:106489..107280(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 77.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | MAVGKNKRLTKGG-KKGAKKK-VXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFE |
MAVGKNK.LTKGG.KKG.....V...FS.KDWYDVKAPAMFNIRNIGKTLVTRT.GTK..SD.LKG.VFE | |
Retrocopy | MAVGKNKHLTKGG>KKGSQEE>VVGSFSEKDWYDVKAPAMFNIRNIGKTLVTRTRGTKTVSDSLKGCVFE |
Parental | VSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLF |
.SLADLQNDEVAFRK.KLITED.QGKNCLT..........K..S.V.KWQ..IEAHV.VKTT..YLL.LF | |
Retrocopy | MSLADLQNDEVAFRKLKLITEDGQGKNCLTSIAWFS-PMTKCASRVRKWQNVIEAHVNVKTTNSYLLHLF |
Parental | CVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLH |
C..FTKK.NN.I.KT.YAQH.QVRQI.K.MM.IMT.EVQ.NDLKEVVNKLIPDSI.KDIE..CQSIY.LH | |
Retrocopy | CAVFTKKCNNHI*KTFYAQH*QVRQIQKRMMKIMTQEVQSNDLKEVVNKLIPDSI*KDIERVCQSIYMLH |
Parental | DVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
.VFVRKVKMLKKPKFELGKL.ELHGE.SSSGKATGDE.GAKVE.ADGYEPPVQESV | |
Retrocopy | NVFVRKVKMLKKPKFELGKLKELHGEDSSSGKATGDEMGAKVE*ADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |