RetrogeneDB ID: | retro_tbel_1686 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5465:105763..106558(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 88.3 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAVGKNKRLTKGGKKGA-KKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEV |
MA..KNK.LTKGG.KGA.KKKV.DP.SKKD.YDVKAPAMFNIRN.GKTLVTRTQGTKI.SDGLKG.VFEV | |
Retrocopy | MAIDKNKLLTKGGRKGALKKKVADPLSKKDRYDVKAPAMFNIRNTGKTLVTRTQGTKIESDGLKGHVFEV |
Parental | SLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFC |
SLADLQNDEVAFRKFKLITED.QGKNCLTNFHGMDLT..KMCSMVKKWQTMIEAHVDVKTTDGY.L.LFC | |
Retrocopy | SLADLQNDEVAFRKFKLITEDIQGKNCLTNFHGMDLTHGKMCSMVKKWQTMIEAHVDVKTTDGYFLHLFC |
Parental | VGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHD |
.GFTKKRNNQI.KTS.AQHQQVRQI.KK.MEIMTREVQ.NDLKEVV.KLIPDSIGKD.EKACQSIYPLHD | |
Retrocopy | IGFTKKRNNQIWKTSCAQHQQVRQIQKKIMEIMTREVQANDLKEVVTKLIPDSIGKDMEKACQSIYPLHD |
Parental | VFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
VF.RK.KML.KPKFELGKL.EL.GEGSSSGKAT.DE.GAKVERADGYEPPVQESV | |
Retrocopy | VFIRKAKMLRKPKFELGKLVELRGEGSSSGKATADEAGAKVERADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |