RetrogeneDB ID: | retro_tbel_2759 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_118549:6435..7224(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 89.85 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAVGKNKRLTKGGKKGAKKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
MAVGKNKRLTKGGKKGAKKKV.DPFSKKDWYDVKAPA.FNIRNIGKTLVTRTQGTKIASDG.KGRVFEVS | |
Retrocopy | MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAVFNIRNIGKTLVTRTQGTKIASDGRKGRVFEVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKN-CLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFC |
LADLQNDEVAF.KFKLITEDVQGK..CLTNFHGMDLTRDKMCSM..KWQTM.EAHVDVKTTDGYLLRLFC | |
Retrocopy | LADLQNDEVAFKKFKLITEDVQGKK>CLTNFHGMDLTRDKMCSMAEKWQTMTEAHVDVKTTDGYLLRLFC |
Parental | VGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIG-KDIEKACQSIYPLH |
.GFTKK.NNQ.RKTSYAQHQQV.QI.KKMM.IMTREVQ..DLKEVVNKLIP.SIG.KDIEKACQSIYPLH | |
Retrocopy | AGFTKKHNNQMRKTSYAQHQQVCQIQKKMMGIMTREVQSTDLKEVVNKLIPVSIG<KDIEKACQSIYPLH |
Parental | DVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
DVFVRKVK.L.KPKFELGK.ME.H.EGSSSGKATGDETG.KVE.ADGYEPPVQE.V | |
Retrocopy | DVFVRKVKLLSKPKFELGKFMEFH-EGSSSGKATGDETGTKVE*ADGYEPPVQEPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |