RetrogeneDB ID: | retro_hsap_602 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 10:86320198..86320672(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000178429 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSG00000145425 | ||
Aliases: | RPS3A, FTE1, MFTL, S3A | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 95.03 % |
Parental protein coverage: | 78.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
M.V.KNKRLTKGGKKGAKKKVVDPFSKKDWYDV.APAMFNIRNIGKTLVTRTQGTKIASD...GRVFEVS | |
Retrocopy | MVVDKNKRLTKGGKKGAKKKVVDPFSKKDWYDVNAPAMFNIRNIGKTLVTRTQGTKIASD---GRVFEVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV |
LADLQNDEVAFRKFKLITEDVQGKNCLTNFHG.DLT.DKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV | |
Retrocopy | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGVDLTSDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV |
Parental | GFTKKRNNQIRKTSYAQHQQV |
GFTKKRNNQIRKTSYAQHQQV | |
Retrocopy | GFTKKRNNQIRKTSYAQHQQV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .18 RPM | 165 .82 RPM |
bodymap2_adrenal | 0 .20 RPM | 364 .03 RPM |
bodymap2_brain | 0 .14 RPM | 75 .31 RPM |
bodymap2_breast | 0 .10 RPM | 171 .42 RPM |
bodymap2_colon | 0 .52 RPM | 412 .69 RPM |
bodymap2_heart | 0 .02 RPM | 106 .78 RPM |
bodymap2_kidney | 0 .21 RPM | 159 .90 RPM |
bodymap2_liver | 0 .00 RPM | 109 .78 RPM |
bodymap2_lung | 0 .23 RPM | 488 .03 RPM |
bodymap2_lymph_node | 0 .22 RPM | 443 .21 RPM |
bodymap2_ovary | 0 .96 RPM | 526 .47 RPM |
bodymap2_prostate | 1 .18 RPM | 540 .27 RPM |
bodymap2_skeletal_muscle | 0 .05 RPM | 86 .34 RPM |
bodymap2_testis | 0 .19 RPM | 259 .98 RPM |
bodymap2_thyroid | 0 .06 RPM | 233 .87 RPM |
bodymap2_white_blood_cells | 0 .35 RPM | 665 .11 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_7633 | 308 libraries | 520 libraries | 905 libraries | 85 libraries | 11 libraries |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 1 .05 RPM |
CEU_NA11843 | 1 .54 RPM |
CEU_NA11930 | 2 .87 RPM |
CEU_NA12004 | 0 .76 RPM |
CEU_NA12400 | 0 .70 RPM |
CEU_NA12751 | 0 .49 RPM |
CEU_NA12760 | 1 .08 RPM |
CEU_NA12827 | 1 .13 RPM |
CEU_NA12872 | 0 .44 RPM |
CEU_NA12873 | 0 .64 RPM |
FIN_HG00183 | 2 .94 RPM |
FIN_HG00277 | 0 .59 RPM |
FIN_HG00315 | 0 .41 RPM |
FIN_HG00321 | 0 .66 RPM |
FIN_HG00328 | 0 .36 RPM |
FIN_HG00338 | 0 .38 RPM |
FIN_HG00349 | 2 .59 RPM |
FIN_HG00375 | 1 .10 RPM |
FIN_HG00377 | 0 .78 RPM |
FIN_HG00378 | 0 .62 RPM |
GBR_HG00099 | 1 .19 RPM |
GBR_HG00111 | 0 .45 RPM |
GBR_HG00114 | 0 .50 RPM |
GBR_HG00119 | 0 .69 RPM |
GBR_HG00131 | 0 .52 RPM |
GBR_HG00133 | 0 .72 RPM |
GBR_HG00134 | 0 .39 RPM |
GBR_HG00137 | 1 .02 RPM |
GBR_HG00142 | 1 .17 RPM |
GBR_HG00143 | 0 .22 RPM |
TSI_NA20512 | 0 .25 RPM |
TSI_NA20513 | 0 .92 RPM |
TSI_NA20518 | 1 .11 RPM |
TSI_NA20532 | 0 .85 RPM |
TSI_NA20538 | 0 .69 RPM |
TSI_NA20756 | 2 .59 RPM |
TSI_NA20765 | 0 .29 RPM |
TSI_NA20771 | 2 .52 RPM |
TSI_NA20786 | 0 .34 RPM |
TSI_NA20798 | 0 .56 RPM |
YRI_NA18870 | 2 .47 RPM |
YRI_NA18907 | 0 .55 RPM |
YRI_NA18916 | 0 .46 RPM |
YRI_NA19093 | 0 .34 RPM |
YRI_NA19099 | 1 .12 RPM |
YRI_NA19114 | 0 .50 RPM |
YRI_NA19118 | 0 .31 RPM |
YRI_NA19213 | 0 .33 RPM |
YRI_NA19214 | 0 .12 RPM |
YRI_NA19223 | 0 .32 RPM |