RetrogeneDB ID: | retro_tbel_438 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_2084:3263..3715(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000016966 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 84.71 % |
Parental protein coverage: | 59.09 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KMCSMVK-KWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQ |
KMCS.VK.KWQTMIEAHVDVKTTDGYLLRLFCVGFTKKR.NQ.RKTS.AQH.QVRQI...MMEIM....Q | |
Retrocopy | KMCSLVK<KWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRDNQVRKTSSAQHEQVRQIQR-MMEIM----Q |
Parental | TNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETG |
TNDLKEVVNKLI.D..GKDI.KACQSIY..HDVF.RKVKM.KKPKFELGKL.ELHGEG.SSGKATG.ETG | |
Retrocopy | TNDLKEVVNKLIRDCTGKDIDKACQSIYSFHDVFIRKVKMPKKPKFELGKLVELHGEGGSSGKATGGETG |
Parental | AKVERADGYEPPVQESV |
AKVERADGYEPPVQESV | |
Retrocopy | AKVERADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |