RetrogeneDB ID: | retro_tbel_973 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3469:128836..129628(-) | ||
Located in intron of: | ENSTBEG00000002040 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 90.23 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MAVGKNKRLTKGGKKGAKKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
MAVGK.K.LTKG.KKGAKKKV.DPFSKKDW.DVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGR.F.VS | |
Retrocopy | MAVGKSKHLTKGVKKGAKKKVVDPFSKKDWCDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRMFKVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQT-MIEAHVDVKTTDGYLLRLFC |
.ADLQ.DEVAFRKFKLITEDV.GKNCLTN.HGM.LT.DKMCSMVKKWQT.MIEAHVD.KTTDGY.LRLFC | |
Retrocopy | IADLQKDEVAFRKFKLITEDVPGKNCLTNLHGMGLTHDKMCSMVKKWQT<MIEAHVDIKTTDGYWLRLFC |
Parental | VGFTKKR-NNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLH |
VGFTKK..NN.IRKTSYAQHQQVRQI.K.MMEIMTREVQTNDLKEVVNKLIPDS.GKDIEKACQSIY.LH | |
Retrocopy | VGFTKKM>NNPIRKTSYAQHQQVRQIQK*MMEIMTREVQTNDLKEVVNKLIPDSLGKDIEKACQSIYLLH |
Parental | DVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
.VFVRKVKMLKKPKFELGKLMELHGEG.SSGKATGDETG.KVERADGYEPPVQESV | |
Retrocopy | EVFVRKVKMLKKPKFELGKLMELHGEGNSSGKATGDETGPKVERADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |