RetrogeneDB ID: | retro_tbel_3882 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_2724:100431..101215(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 80.45 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | MAVGKNKRLTKGGKKGAKKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
MAVGKNKRL.KGGKK..KKK..DPF..KD.YDVK..AMFNIRNIGKTLVTR.QG.KI..DGL.G.VFEVS | |
Retrocopy | MAVGKNKRLMKGGKKRTKKKMLDPFF*KD*YDVKVLAMFNIRNIGKTLVTRSQGCKIVFDGLNGHVFEVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKN-CLT-NFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLF |
LAD.QND.VAFRKFKLITEDVQGKN.CLT.NFH.MDLT..K.C.MVKKWQTMIEAHV.VKTT..YLL.LF | |
Retrocopy | LADHQNDKVAFRKFKLITEDVQGKN<CLT<NFHDMDLTCYKTCPMVKKWQTMIEAHVNVKTTKDYLLCLF |
Parental | CVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLH |
CV.FTKK.N.QIRKT..AQHQQV..I.KKMMEI.T.E.QTNDLKEVV.KLIPD.IGK.IEK.C.SIYPLH | |
Retrocopy | CVVFTKKCNSQIRKTP*AQHQQVC*IWKKMMEITTQEMQTNDLKEVVDKLIPDNIGKEIEKVCLSIYPLH |
Parental | DVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
DVFVRKVKMLKKPKFELGKLME.H...SSSGKATGDETGAKV.RADG..PPVQESV | |
Retrocopy | DVFVRKVKMLKKPKFELGKLMEPH--DSSSGKATGDETGAKVDRADG*KPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |