RetrogeneDB ID: | retro_mluc_862 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429780:7509955..7510750(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMLUG00000029305 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSMLUG00000014788 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 80.83 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
MAVGKNK.LTKG.KKGAKKKVVDPFSKKDWYDVKAPA.FNIRNIGKTLVTRTQGTKIASDGLKG.VFEVS | |
Retrocopy | MAVGKNKCLTKGSKKGAKKKVVDPFSKKDWYDVKAPALFNIRNIGKTLVTRTQGTKIASDGLKGPVFEVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV |
LADLQN.EVAFRKF.LITED.QGKNCLTNFHGMDLT.DKMCSMVKKWQTMIEAH............L.C. | |
Retrocopy | LADLQNNEVAFRKFMLITEDIQGKNCLTNFHGMDLTCDKMCSMVKKWQTMIEAHMSMSRLP-MVICLVCS |
Parental | GFTKKRNNQIRKTSYAQHQQVRQIRK--KMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLH |
.........IR...........Q.R...KMMEIMTR.VQTNDLKEVVNKLIPDSIGKDIEKACQSIYPL. | |
Retrocopy | VLVSLKSTTIRFRRPLMLARHQQVRRIQKMMEIMTRVVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLY |
Parental | DVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
DVFVRKVKMLKKPKFELGKLMELHGEGSSS.K.TGDETGAKVE.ADGYEPPVQESV | |
Retrocopy | DVFVRKVKMLKKPKFELGKLMELHGEGSSSEKPTGDETGAKVEQADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |