RetrogeneDB ID: | retro_tbel_1720 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5555:94550..95343(-) | ||
Located in intron of: | ENSTBEG00000016510 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 74.36 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 7 |
Parental | MAVGKNKRL-TKGGKKGAKKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEV |
MAV.KN..L..KG..KG.KKKV.D.FS.KDWY.VKAPAMFNIRNIGKTLVT.TQGTKIASDGL...VFEV | |
Retrocopy | MAVDKNTYL<MKGSEKGVKKKVVDLFSRKDWYEVKAPAMFNIRNIGKTLVTKTQGTKIASDGLNCHVFEV |
Parental | SLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKK-WQTMIE-AHVDVKTTDGYLL-- |
S.ADLQNDE.AFRKF.L.TEDVQGKNCL.N.HGMDLT..KMCSM.KK.WQ.MIE..HVDVK.T...L... | |
Retrocopy | SFADLQNDEFAFRKFMLFTEDVQGKNCLINLHGMDLTWEKMCSMIKK>WQIMIE<THVDVKATY*WLFAS |
Parental | RLFC-VGFTK-KRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQS |
.L.C..GF.K.K.NNQI.K.SYA.H.QV.QI.KKMMEIMT.EVQTNDL.EVVN..IPDSIGKD.EK.CQS | |
Retrocopy | SLLC<LGFLK<KCNNQIQKISYA*H*QVHQIQKKMMEIMTKEVQTNDLEEVVNTSIPDSIGKDVEKPCQS |
Parental | IYPLHDVFVRKV-KMLKKPKFELGKLMELHGEGSSSGKATG-DETGAKVERADGYEPPVQESV |
IY.L.D.F.RKV.KML.KPKFELGK.MELHGE..SSGK.TG.DE.GA.VE..DGYEPPVQESV | |
Retrocopy | IYALRDGFIRKV<KMLRKPKFELGKFMELHGEDNSSGKTTG<DEMGAQVE*TDGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |