RetrogeneDB ID: | retro_tbel_2959 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_125360:107414..108202(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 79.78 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MAVGKNKRLTKGGKKGAKKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
MA.GKNK.LTKG.KKGAKKKV.DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIA.DGLKGRVFEVS | |
Retrocopy | MAAGKNKHLTKGSKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIAFDGLKGRVFEVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV |
LADL.N.E.AF.K.KL.TEDVQGKNCLTNF.GM.LTRDKMCS.VKKWQTM.EAHV.VK...GYLL.LFCV | |
Retrocopy | LADL*NEEAAFGK*KLTTEDVQGKNCLTNFQGMELTRDKMCSTVKKWQTMTEAHVHVKNSNGYLLCLFCV |
Parental | GFTKKRNNQIRKTSYAQHQQVRQIRK-KMMEIMTREVQTNDLKEVVNKLIPDSI-GKDIEKACQSIYPLH |
GFTKK...Q......A........RK.KM.EIMT...Q.ND.KE.VNKLIPDSI.GK.IEK.CQSI.PLH | |
Retrocopy | GFTKKM-QQYGRPLMASTSRSSKSRK<KMTEIMTWDMQKNDCKEEVNKLIPDSI>GKNIEKPCQSICPLH |
Parental | DVFVRKVKMLK-KPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
D.FVRKVKMLK.KPKFELGKL.E.HGEGSSSGKATGDETGAK.ERADGYEPPVQESV | |
Retrocopy | DIFVRKVKMLK<KPKFELGKLTEFHGEGSSSGKATGDETGAKDERADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |