RetrogeneDB ID: | retro_tbel_3786 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_15331:596..1031(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 74.67 % |
Parental protein coverage: | 55.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | WQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQT-NDLKEVV |
W.TMIEAHVDV.TTDG.LL.LFC.GFTKKRNN.I.KTS.AQHQQ.R.I..KM.EI..REVQT.N.L..V. | |
Retrocopy | WLTMIEAHVDVATTDGHLLHLFCAGFTKKRNNRIWKTSHAQHQQARHIQSKMVEITAREVQT<NVLRKVA |
Parental | NKLIPDSIGKDIEKA-CQSIYPLHDVFVRKVKMLKKPKFE-LGKLMELHGEGSSSGKATGDETGAKVERA |
NK.IPDS.G...E.A.CQS..PLHDVFVRKVKMLKKPKFE..GKLMELHGEG.SSGKA..DE.GAK.E.A | |
Retrocopy | NK*IPDSMG-NTEQA<CQSVHPLHDVFVRKVKMLKKPKFE<RGKLMELHGEGGSSGKASRDERGAKAEQA |
Parental | DGYEPPVQES |
DGYEPP.QES | |
Retrocopy | DGYEPPLQES |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |