RetrogeneDB ID: | retro_tbel_2657 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_115543:212153..212646(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 71.69 % |
Parental protein coverage: | 62.5 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | FHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMM |
F..MDLT.DK..SMVKKWQ.M.EAH.D.KTTDGYL..LFCVGF......QI.K.SYAQHQQV.QI.K.MM | |
Retrocopy | FCDMDLTCDKIRSMVKKWQIMTEAHADIKTTDGYLFGLFCVGFXXXXXXQIWKNSYAQHQQVHQIHK-MM |
Parental | EIMTREVQTNDLKEVVNKLIPDSIGK-DIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSS |
E..TREV.TNDLKEVVNKL...SIGK..IEKACQS..PLH.VF.RKVKMLKKP.FELGKL.E.HGEGSSS | |
Retrocopy | EVYTREV*TNDLKEVVNKLTLGSIGK>GIEKACQSTSPLHHVFIRKVKMLKKPRFELGKLSEFHGEGSSS |
Parental | GKATGDETGAKVERADGYEPPVQESV |
...TG.ETG.KVE.ADGY.P.V.ES. | |
Retrocopy | EITTGNETGTKVE*ADGYKPLVPESL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |