RetrogeneDB ID: | retro_tbel_11 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_102747:8890..9583(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000008523 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 90.56 % |
Parental protein coverage: | 88.26 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAVGKNKRLTKGGKKGAKKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVS |
MAV.KNKRL.KG.KKGAKKKV.DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKI.SDGLKGRVFEVS | |
Retrocopy | MAVSKNKRLMKGCKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIVSDGLKGRVFEVS |
Parental | LADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCV |
L.DLQNDEV.FRKFKLITEDVQGKNCL.NF.GMDLTRDKMCSMV.KWQT.IEAHVDVKT.DGYLL.L..V | |
Retrocopy | LEDLQNDEVTFRKFKLITEDVQGKNCLPNFYGMDLTRDKMCSMVEKWQTVIEAHVDVKTADGYLLSL--V |
Parental | GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV |
G.TKKRNNQI.KTSYAQHQQVRQI.KKMMEIMTREVQTNDL.EVVNKLIPDSIGKDIEKACQS.YPLHDV | |
Retrocopy | GSTKKRNNQIQKTSYAQHQQVRQIQKKMMEIMTREVQTNDLEEVVNKLIPDSIGKDIEKACQSFYPLHDV |
Parental | FVRKVKMLKKPKFELGKLMELHG |
F.RKVKMLKKPKF.LGKLMELHG | |
Retrocopy | FIRKVKMLKKPKFKLGKLMELHG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |