RetrogeneDB ID: | retro_tbel_92 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1097:556574..557078(+) | ||
Located in intron of: | ENSTBEG00000008517 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 86.47 % |
Parental protein coverage: | 63.64 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | LTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKR-NNQIRKTS-YAQHQQVRQI |
L..FHGMDLT.DKMCSMVKKWQT.IEAHV.VKTTDGYLLRLFCVGFTK...NNQIRKTS..AQHQQV.QI | |
Retrocopy | LPDFHGMDLTHDKMCSMVKKWQTKIEAHVNVKTTDGYLLRLFCVGFTKTM>NNQIRKTS<HAQHQQVHQI |
Parental | RKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGE |
.KKMMEIMTREVQT.DLKEVVNKLIPDS.G.DI.KACQSIYPLHDVFVRKVKMLK.PKF.LG.LM.LHGE | |
Retrocopy | QKKMMEIMTREVQTSDLKEVVNKLIPDSTGQDI*KACQSIYPLHDVFVRKVKMLKTPKFQLGRLMDLHGE |
Parental | GSSSGKATGDETGAKVERADGYEPPVQESV |
GSSSGKA.GDETGAKVERADGYEPPV.E.V | |
Retrocopy | GSSSGKAPGDETGAKVERADGYEPPVREYV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |