RetrogeneDB ID: | retro_tbel_1318 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4389:455207..455830(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 63.47 % |
Parental protein coverage: | 81.06 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 5 |
Parental | TKGGKKGAKKKVXDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQG-TKIASDGLKGRVFEVSLADLQNDE |
T....K...KKV.DPFS..D.YDVK.PAMF.I.NIGKTLVT.TQG...I..DGLKG.VFEV.L.DLQNDE | |
Retrocopy | TRPS*KRGRKKVVDPFSQNDLYDVKVPAMFSIKNIGKTLVTKTQG<SQILTDGLKGHVFEVVLIDLQNDE |
Parental | VAFRKFKLITEDVQ-GKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRN |
V.FRKFKL.TEDVQ..KN.LTNFHGMD.T.DK...MVKK.QT.IEAHVDV.......L....V.FTKK.N | |
Retrocopy | VTFRKFKLMTEDVQ>NKN-LTNFHGMDVTCDKTGFMVKK*QTIIEAHVDVNYQWSFCL---FVDFTKKHN |
Parental | NQI-RKTSYAQHQQVRQIRKKMMEIMTRE-VQTNDLKEVVNKLIPDSIGKDI-EKACQSIYPLHDVFVRK |
NQI.R......H.......K.M.EIMT.E...T.DLKE.V.K.IPDS.GKDI..KA..S..PLHDVFVRK | |
Retrocopy | NQI>RVS*AQHHKICQTSKKMM-EIMT*E<GETDDLKEMVKKPIPDSTGKDI<QKAGRSSCPLHDVFVRK |
Parental | VKMLKKPKF |
VKML.KPKF | |
Retrocopy | VKML-KPKF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |