RetrogeneDB ID: | retro_tbel_912 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3297:404914..405412(-) | ||
Located in intron of: | ENSTBEG00000000616 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 85.12 % |
Parental protein coverage: | 63.64 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRK |
LTNFHGMDLTRDKMC.MVKKW..MIEAHVDVKTTDG.LL.LFC..FTKK..NQIRKT..AQH.QVRQI.K | |
Retrocopy | LTNFHGMDLTRDKMCPMVKKW*NMIEAHVDVKTTDGNLLHLFC-WFTKKCKNQIRKTPFAQHLQVRQIQK |
Parental | KMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGS |
.MMEIMTREV.TNDLKEVVNKLIPDS.GKDI.KACQSIYPLHDVF.RKVK.LKKPKF.LGKLME.HGE.. | |
Retrocopy | -MMEIMTREV*TNDLKEVVNKLIPDSTGKDIDKACQSIYPLHDVFARKVKLLKKPKFQLGKLMETHGEVT |
Parental | SSGKATGDETGAKVERADGYEPPVQESV |
SSGKATGDE.GAKVERADGYEPP.QESV | |
Retrocopy | SSGKATGDEMGAKVERADGYEPPIQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |