RetrogeneDB ID: | retro_tbel_373 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1902:149089..149693(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000000845 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 93.07 % |
Parental protein coverage: | 76.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGY |
GRVFEVSLADLQND.VAFRKFK.ITEDVQGKNCL.NFHGMDLT.DKMCSMVKKWQTMIE.HV.VKT.DGY | |
Retrocopy | GRVFEVSLADLQNDAVAFRKFKIITEDVQGKNCLANFHGMDLTCDKMCSMVKKWQTMIEVHVNVKTPDGY |
Parental | LLRLFCVGFT-KKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQ |
LLRLFCV.FT.KKRNNQIRKTSYAQHQQV.QIRKKMMEIMTREVQTNDLKEVVNKLIP.SIGKDIEKACQ | |
Retrocopy | LLRLFCVEFT>KKRNNQIRKTSYAQHQQVCQIRKKMMEIMTREVQTNDLKEVVNKLIPVSIGKDIEKACQ |
Parental | SIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
SIYP.HDVFVRKVKMLKKPKFELGKLMELHGE.SSSGKATGDE.GAKVERADGYEPPVQESV | |
Retrocopy | SIYPFHDVFVRKVKMLKKPKFELGKLMELHGEVSSSGKATGDEMGAKVERADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |