RetrogeneDB ID: | retro_tbel_2483 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_111723:43334..43912(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 88.21 % |
Parental protein coverage: | 73.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LADLQNDEVAFRKFKLITEDVQGKNC-LTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFC |
..DLQNDEVAFRKFKLITED.QGKNC..TNFHGM.LT.DKMCSMVKKWQTMIEAHVD.KTTDGYLLRLFC | |
Retrocopy | ISDLQNDEVAFRKFKLITEDAQGKNC<STNFHGMTLTHDKMCSMVKKWQTMIEAHVDFKTTDGYLLRLFC |
Parental | VGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHD |
V...KK.NNQIRK.SYAQH.QVRQI.KKMM.IMT.EVQTNDLKEVVNKLIPDS.GKDI.K.CQSIYPLHD | |
Retrocopy | VRLAKKHNNQIRKASYAQH*QVRQIQKKMM-IMTQEVQTNDLKEVVNKLIPDSSGKDIKKSCQSIYPLHD |
Parental | VFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
VFVRKVKMLKK.KFE.GKLMELHGEGSSSGKATGDETGA.VERADGYEPPVQESV | |
Retrocopy | VFVRKVKMLKKSKFESGKLMELHGEGSSSGKATGDETGARVERADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |