RetrogeneDB ID: | retro_tbel_137 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1265:48551..48951(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 88.15 % |
Parental protein coverage: | 50.76 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | DGYLLRLFCVGFTKK-RNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEK |
DGYLL.LF.VGFTKK.RNNQI.KTSYAQHQQVRQ.RKK.MEIMTREVQTNDLKEVVNKLIPDS.GKDIEK | |
Retrocopy | DGYLLHLFSVGFTKK>RNNQIWKTSYAQHQQVRQVRKK-MEIMTREVQTNDLKEVVNKLIPDSSGKDIEK |
Parental | ACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
ACQSIYPLHDVFVRKV.MLKKP.FELGK.MELHGEGSS.GKA.GDE.GA..E.ADGYEPPVQESV | |
Retrocopy | ACQSIYPLHDVFVRKVQMLKKPEFELGKRMELHGEGSSFGKAAGDEMGAQDEWADGYEPPVQESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |