RetrogeneDB ID: | retro_tbel_90 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_1083:13103..13643(-) | ||
Located in intron of: | ENSTBEG00000006623 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSTBEG00000002963 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 81.62 % |
Parental protein coverage: | 68.94 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | APAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMD |
APAMFN.RN.GKTLVTRTQGT..ASDG.KGRVFEVS.AD.Q.D.VAFRKFKL.TED.QGK.CLTNFHGM. | |
Retrocopy | APAMFNVRNTGKTLVTRTQGTSTASDGRKGRVFEVSPADVQSDDVAFRKFKLNTEDAQGKDCLTNFHGMG |
Parental | LTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQI-RKTSYAQHQQ-VRQIRKKMMEIM |
LTRDKMC..V.KWQTM.EAHVDVKTTDGYLL.LFCV.FTKK.NNQ..RKTSYAQH.Q.V.QIR.KMMEI. | |
Retrocopy | LTRDKMCPTVIKWQTMTEAHVDVKTTDGYLLCLFCVVFTKKCNNQT<RKTSYAQHEQ<VGQIR-KMMEIV |
Parental | TREVQTNDLKEVVNKLIPDSIG-KDIEKACQSIYPLHDVFVRKVK |
TRE.QTNDL.EVV.KLIPDSIG.KDIEKACQSIYPLHDVFV...K | |
Retrocopy | TRELQTNDLEEVVSKLIPDSIG<KDIEKACQSIYPLHDVFVMSGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |