RetrogeneDB ID: | retro_mluc_1197 | ||
Retrocopylocation | Organism: | Microbat (Myotis lucifugus) | |
Coordinates: | GL429805:1954591..1955379(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSMLUG00000014788 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 71.69 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 8 |
Parental | MAVGKNKRLTK-GGKKGAKKKVVDPFSKKDWYD-VKAPAMFNIRNIGKTLVTRTQGTKIASD-GLKGRVF |
M...KNK.L.K...KK..KKK..DPF.KKDWY..V.APAMFNI.N.G..LVTRTQGTKIAS..GL.G.VF | |
Retrocopy | MMMDKNKCLMK<STKKETKKKLFDPFFKKDWYS>VNAPAMFNIQNVGRILVTRTQGTKIASM<GLRGGVF |
Parental | EVSLADLQNDEVAFRKFKL-ITEDVQGK-NCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLL |
.VSL.DLQ.D..AFR.FKL.ITE..QGK.NCL.NFH.MDLT.DKMCS.VKKWQ.MIEAH.DVKTT.GYLL | |
Retrocopy | GVSLVDLQSDDAAFRIFKL<ITENFQGK<NCLINFHVMDLTHDKMCSVVKKWQSMIEAHLDVKTTNGYLL |
Parental | RLFCVGFTKKR-NNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSI |
.LFCVGFTKK..NNQIRKTS.AQHQQVRQ...KMM.I.TREVQ..DLK.VVNKL.P.S.G.DI.K.C.SI | |
Retrocopy | YLFCVGFTKKL>NNQIRKTSCAQHQQVRQVLNKMMKIITREVQASDLKVVVNKLLPESTGRDIGKPCHSI |
Parental | YPLHDV-FVRKVKMLKKPKFE-LGKLMELHGEGSSSGKATGDETGAKVERADGYEPPVQESV |
..LHDV..VRKVKML.K.KF..LGKLME..GEGSSSGKAT.DETGAKVE.AD.Y...V.ESV | |
Retrocopy | SLLHDV<LVRKVKMLEKTKFD<LGKLMEFPGEGSSSGKATEDETGAKVE*ADEYKALVHESV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |