RetrogeneDB ID: | retro_opri_1059 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_6401:14632..14944(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSOPRG00000001204 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 71.15 % |
Parental protein coverage: | 83.2 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | AINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIR |
AI..VVT.E.TINIHK.IH.V.F.K.APR.LKEI.KFAMKEMGTPDV.I..RLN.AVW.KG.RN.PY.I. | |
Retrocopy | AIS*VVTWEQTINIHKHIHKVDFQKWAPRVLKEIWKFAMKEMGTPDVCIEIRLNRAVWPKGTRNIPYCIC |
Parental | VRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQT |
.RLS.K.NE.EDS.NK.YTL.T.VP.TTFKNLQ. | |
Retrocopy | MRLSGKHNEAEDSLNKPYTLLTCVPITTFKNLQS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |