RetrogeneDB ID: | retro_opri_531 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_15372:53675..54024(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSOPRG00000001204 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 56.56 % |
Parental protein coverage: | 96. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MAPAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIR-KFAMKEMGTPDVRIDTRLN |
MAPAK..........AI.EVV...YT..IHK.IH..GFKK....AL.EI..K.A..E.GT.D..IDTRLN | |
Retrocopy | MAPAK---KNRRVVFAIDEVVRWGYTNDIHKHIHELGFKKQDC*ALREIE<KHALEELGTADMCIDTRLN |
Parental | KAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNK-LYTLVTYVPVTTFKNLQTV |
K...A.G.R..PY.I.VRLSRK.NEDED..NK....LVTYVPV.T.K.LQ.V | |
Retrocopy | KTA*ATGRRSLPYCI*VRLSRKHNEDEDLANK<TCILVTYVPVITSKYLQSV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |