RetrogeneDB ID: | retro_tbel_3812 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_16480:94929..95291(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSTBEG00000016254 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 62.1 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PAKKGGEKKKGRSAINEV-VTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKA |
P..KG.EK....SAINEV.VT..YTINI.K.IHG.G..K.A...LK.I.KF.MKEMGTP...IDTRLNKA | |
Retrocopy | PINKGSEKMEC-SAINEV<VTLDYTINILKCIHGIGLEKCASQGLK-I*KFSMKEMGTPYMCIDTRLNKA |
Parental | VWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
.W.KGIR...Y.I.V.LSRK.NEDE.S.NKL.TL.TYVPV.TF..LQ......N | |
Retrocopy | IWTKGIRKDSYHIHVQLSRKHNEDEVSSNKLCTLLTYVPVSTFRILQSIWMKSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |