RetrogeneDB ID: | retro_opri_58 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_1485:164150..164439(-) | ||
Located in intron of: | ENSOPRG00000015799 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSOPRG00000001204 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 68.69 % |
Parental protein coverage: | 76.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | YTINIHKRIHG-VGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRI-RVRLSRKR |
YTINI.K.IH...G.KK.APR..KE..KFAMKEMGTP.V..DTRLN.A..AKGI.NVPY....VRLSRKR | |
Retrocopy | YTINIFKPIHEWCGSKKHAPRVFKEVHKFAMKEMGTPGVCMDTRLNQAARAKGIQNVPYHT<CVRLSRKR |
Parental | NEDEDSPNKLYTL-VTYVPVTTFKNLQTV |
.E.ED.PNKL.TL.VT.VPVTT.KNLQ.. | |
Retrocopy | HEGEDPPNKLSTL<VTCVPVTTSKNLQSM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |