RetrogeneDB ID: | retro_opri_710 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_25125:48077..48401(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSOPRG00000001204 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 57.14 % |
Parental protein coverage: | 88. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KKGRSAINEVVT-REYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRN |
.KG.S....VV...E.T.N.H..I.GV...K.AP....E...FAMKE.GTP.VRID.RLNKAVWAKG.R. | |
Retrocopy | QKGHSSTSQVVA<LEFTTNAHQHIYGVSCNKWAPQTFQESQNFAMKEKGTPAVRIDMRLNKAVWAKGMRY |
Parental | VPYRIRVRLSRKR-NEDEDSPNKLYTLVTYVPVTTFKNLQTV |
VP..I..RLSRK..NE.E..PN..Y.L.TYVPVTTF.NL... | |
Retrocopy | VPHCICLRLSRKM>NENEGFPN--YILLTYVPVTTFSNLPSM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |