RetrogeneDB ID: | retro_tbel_2582 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_113515:122891..123179(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSTBEG00000016254 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 77.08 % |
Parental protein coverage: | 78.05 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | YTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNE |
YTI.I..RIHG.GFKK..P.ALKEI.KFAMKEMGTPDV.IDTRLN.AVWAKGIRNVPY.I.V.LSRK.NE | |
Retrocopy | YTIDILNRIHGMGFKKCVPLALKEILKFAMKEMGTPDVHIDTRLNTAVWAKGIRNVPYGIHVQLSRK*NE |
Parental | DEDSPNKLYTLVTYVPVTTFKNLQTV |
.EDSP...Y.LVTY.PVTTFKNLQ.. | |
Retrocopy | GEDSPSIIYILVTYAPVTTFKNLQSM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |