RetrogeneDB ID: | retro_tbel_3801 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_1604:68698..69050(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSTBEG00000016254 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 78.99 % |
Parental protein coverage: | 95.93 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFKKRAP-RALKEIRKFAMKEMGTPDVRIDTRLNKA |
PAKKG.EKK.GRSAI..VVTREYT.NIHK.IHGVGFKK.AP.R.LKEI.KFA.KEMGTPDV.IDTR.NKA | |
Retrocopy | PAKKGDEKK-GRSAITKVVTREYTNNIHKHIHGVGFKKCAP>RYLKEIQKFAIKEMGTPDVCIDTRFNKA |
Parental | VWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTV |
.WAKGIRNVP..I.V.LSRK.NED.DSPNKLYTLVTY.PV.TF.NLQ.. | |
Retrocopy | LWAKGIRNVPCGIHVWLSRKQNED*DSPNKLYTLVTYLPVNTFINLQSM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |