RetrogeneDB ID: | retro_tbel_3015 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_12641:935..1274(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSTBEG00000016254 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 67.8 % |
Parental protein coverage: | 93.5 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | PAKKGGEKKKGRSAINEVV-TREYTINIHKRIHGVGFKKRAP-RALKEIRKFAMKEMGTPDVRIDTRLNK |
PAK.GGE...GRSA..EVV..RE.T..IHK..HGVG...RAP.RAL..I.KF...E.GTP.VR.DTRLN. | |
Retrocopy | PAKEGGES*-GRSAVSEVV<AREHTLRIHKCTHGVGSEERAP<RALRGIWKFSRRETGTPGVRTDTRLNT |
Parental | AVWAKGIRNV-PYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNL |
AVWA.GIRNV.PYR...RLSRKR...EDSP.KLYTL.TYVPVTT.KNL | |
Retrocopy | AVWATGIRNV<PYRMHARLSRKRTKGEDSPHKLYTLGTYVPVTTYKNL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |