RetrogeneDB ID: | retro_tbel_788 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3026:257150..257510(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSTBEG00000016254 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 69.84 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | PAKKGGEKKK-GRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKA |
P..K.G.KKK...SAINE.VT.EYT.NIHKRI.G.G.....P.....I.KFAMKEM.TPDV.IDT.LNKA | |
Retrocopy | PSRKSG-KKK<SHSAINEMVTQEYTVNIHKRIYGCGLQETCP-SCTQI*KFAMKEMETPDVCIDTKLNKA |
Parental | VWAKGIRNVPYRIRVRLSRKRNEDED-SPNKLYTLVTYVPVTT-FKNLQTVNVDEN |
VWAKGIRN.PY.I.V.LSRK.NEDED.SPNKL.TLVTYV.VTT.FKNL.T.NVD.N | |
Retrocopy | VWAKGIRNIPYYIHVQLSRKHNEDED<SPNKLSTLVTYVLVTT<FKNLRTANVDVN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |