RetrogeneDB ID: | retro_tbel_2930 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_123908:28888..29256(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSTBEG00000016254 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 75. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | PAKKGGEKKKGR-SAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKA |
P.KKGGEKK.G..SAIN.VV..EYTINIH..IHG.GFK..APRALKEI...AMKEM.T.DV..D.R..KA | |
Retrocopy | PIKKGGEKKEGH<SAINKVVAQEYTINIHNCIHGMGFKNHAPRALKEICQLAMKEMETSDVYMDVRFSKA |
Parental | VWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTVNVDEN |
VWAK.IRNVPY.IRV.LSRK.NEDE..PNKLYT.VTYVPVTTF.NL.TVNVDEN | |
Retrocopy | VWAKRIRNVPYLIRVWLSRKHNEDENLPNKLYTMVTYVPVTTFNNL*TVNVDEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |