RetrogeneDB ID: | retro_tbel_3484 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_142288:31965..32329(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSTBEG00000016254 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 63.11 % |
Parental protein coverage: | 95.93 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | PAKKGGEKKKGRSAINEVVTR-EYTINIHKRIHGVGFKKRAPRALK---EIRKFAMKEMGTPDVRIDTRL |
P.KKG..KKKG.SAINEVVT..E.TINIHK.....G.....P.......EI.K...KEMGT.DVRIDTRL | |
Retrocopy | PTKKGSKKKKGPSAINEVVTG>EDTINIHKAHPLCGLQETRPSGTQRNPEI*KR*KKEMGTLDVRIDTRL |
Parental | NKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTYVPVTTFKNLQTV |
NKAVWAKGIR.....I.V.LSRK...DEDS.NKLYTL.T.VPVT.FKNLQ.. | |
Retrocopy | NKAVWAKGIRTIA*NIHVQLSRK*SKDEDSSNKLYTLLTSVPVTAFKNLQSM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |