RetrogeneDB ID: | retro_tbel_2024 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_714:48773..49136(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL31 | ||
Ensembl ID: | ENSTBEG00000016254 | ||
Aliases: | None | ||
Description: | ribosomal protein L31 [Source:HGNC Symbol;Acc:10334] |
Percent Identity: | 62.7 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | PAKKGGEKKKGRSAINEVVTREYTINIHKRIHGVGFK-KRAPRALKEIRKFAMKEMGTPDVRIDTRLNKA |
P.KKGG.KKKG.SAIN.VVTREYTI.IHK..H.V.F..K.AP.AL.....F....MGT.DVR.DTRLN.. | |
Retrocopy | PTKKGGRKKKGCSAINKVVTREYTISIHKYVHHVDFQ<KCAPQALRNLKIF-HERMGTLDVRVDTRLNQT |
Parental | VWAKGIRNVPYRIRVRLSR-KRNEDEDSPNK-LYTLVTYVPVTTFKNLQTVNVDEN |
.W...IR..P..I.V..SR.K.NED.DSPN...YTLVTYVPVTTFKN.QTV...EN | |
Retrocopy | AWDTEIRGIPCHIHVQFSR<KTNEDGDSPNN<FYTLVTYVPVTTFKN*QTVKEGEN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |